rs49415459 SNP Detail

Summary

• ID
  rs49415459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108307151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTATAAATGA TCAGCAGATG TTGTTTGTTT CTTAATTGTG
  ACTCTCTCGA TAAGAGTCCA TTTATATATA CTGGGTCAAT GAAGAGTTTT TATTTTTACA
  Y
  TTTGTGAGTA TATGTGTGTA AAAGGGTGTG TGTGTGTGCC CACAGAATTC AGAAGTTGAT
  GTCAAATGTC TTTTCTCAAT TGTTCTTCAA TTTATTGTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss133499659	ENSMUSSNP6656881	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49415459					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108307151 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr399812	regulatory region 399812	1580 bp downstream
Rr636077	regulatory region 636077	267 bp proximal