rs49415388 SNP Detail

Summary

• ID
  rs49415388
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8104573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGGCACC ATTCCTTGGA
  AGGGACCCTA AACTGTACAC GAGTGAATAA ATAGAACAGA ACATACAGGT AAGCAACTGA
  GCATGCATGC AATCATCCTC TCTTTGTCCT TGACTGTGGA TGTGATGTGA CCAGCTCCCT
  CAAGCTCCTG CTGCTACTTC CCTGCTAGGA TGTATTATAA CCTGAAATGT TGAGCTAAAA
  K
  AAGCTTTGTT CTGTAAGTTG CTTTTTGTCA GGATATTTTA TTACTGAAAC AGAAATAAAA
  CCAAAACACC ATAATGTAAC CACATATTTC CCATCATTGC AAATTAGCTA CCTAAACAAA
  ACTCTCATTA ATAGCCTAGT GGGAAAATAA AGTGTCCCAA TTGTTACCCA GAATGCAGCC
  TTTTATACTC GGTCCTAAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss132961630	ENSMUSSNP5062687	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49415388					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8104573 () rs orientation: forward

Symbol	Name	Function Class
Col28a1	collagen, type XXVIII, alpha 1	Intron
D6Mit348	DNA segment, Chr 6, Massachusetts Institute of Technology 348	534 bp proximal
Rr626348	regulatory region 626348	355 bp proximal
Rr626349	regulatory region 626349	1233 bp proximal