rs49414207 SNP Detail

Summary

• ID
  rs49414207
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150671134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCATA GGTGTGGGTG TGTGTGTGTG
  T
  GAGAGAGAGG GGGGGGGGAG AACGA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148055125	ENSMUSSNP5614351	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321429400	CHEV_4_149960786	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49414207					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150671134 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rere	arginine glutamic acid dipeptide (RE) repeats			Intron
				Noncoding-Transcript-Variant
Rr377423	regulatory region 377423			1356 bp downstream
Rr605343	regulatory region 605343			562 bp distal
Rr605344	regulatory region 605344			within coordinates
Rr605345	regulatory region 605345			1492 bp proximal
Rr605346	regulatory region 605346			1719 bp proximal