rs49410861 SNP Detail

Summary

• ID
  rs49410861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40458521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCCACTG TCTGCCCGAC
  AGTAACAATC ATTGACCTAA ATGCCAGTCA GGCATAAACT CTTTCTGGGA CCCACTCAGC
  TCCAAGCTGA CACAAGTGCC TAAGACACAG TGGTTTTCAT TGAGGATCTT GATGAGAAGC
  ATCCATGGGT TTCCAGTTTG ACCCTCGAGT CCGTATACTT ACCAGAACTT CTGGGTACTG
  Y
  ACTGATTATC TTCCCTTAAG TCTAATCCAC TTCCTTCATC ACTTGAACAG AGAAAATTTA
  AATGTTCTAG TTCAGGTTAA ACTCAGTTCA TTTGGGGCTC TCTCAGCCAA ATGTGAAATA
  ACTCAAACCC CTAGTTTCTC CCGCCTCCAC TTGAGCTCCA CTTGAGCTAC TGTCATGTTG
  CTTGGAAATG GCTCCTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60393727	NES15889394	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49410861					SNP	T	T	T	T	T	T	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393727	NES15889394	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40458521 () rs orientation: forward

Symbol	Name	Function Class
Rr575811	regulatory region 575811	1136 bp proximal