rs49407728 SNP Detail

Summary

• ID
  rs49407728
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:143887718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACACACAT GTGAATAAAA
  CTTTGTAAAG AAAATTAAAA GATGCCTACT TAAATAAACA CCCAATAATG TTTTCAATGG
  AAGTCCATTG GGCCTTCCCA CTTATACTGC AGAGTTATTG AATGTGTATC TGATTTAATT
  TTTTTTCATG AGATAAGGTC TTCCCATGTA ACTCAGGCTA GCCTTACATG TTCCATCGTT
  K
  TATCTCAACT CCCAAGAATA ACCAGCTTTC AGTTTTTTAT CTGCTAAATC CCTCAACCTG
  GCTTTGGGAG GTGGGGGTCA GAAACAACTT CCTGGGGTGG TATGTGCTAC AGACAAGTAC
  AACTACCCTC AGACAGCCCT GTGTGCAACA GTCATACAGG TAGACAGTCA GGGTCTGCCA
  ACTGCTTATA AAAATTACTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147779454	ENSMUSSNP5613466	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49407728					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143887718 () rs orientation: forward

Symbol	Name	Function Class
Banf2	BANF family member 2	Intron
Gm75473	predicted gene, 75473	within coordinates
Rr566364	regulatory region 566364	745 bp distal
Rr566365	regulatory region 566365	499 bp proximal
Rr566366	regulatory region 566366	607 bp proximal