rs49407428 SNP Detail

Summary

• ID
  rs49407428
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27209885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAAATAT AAAGAAAGTC
  AGATATAATA GATGGGTGTA AAGAAAGCCT AATATAGAAA ACACTCTATG GGAAGTGCTG
  TTTTTTTCTT TTTTGAGGAA ATGCTGACAG GAAGCATTTT AGATAATTGT GTGAGAGATG
  ATTGCTGCCA ATCTGTACCA AGCAGGGTGC AGATCCTGGT GAAATAAGGC ACAGTCCTCT
  M
  TCTTTGAATC CCTACTCCGG AGTGTGTATG TGGGGGGAGT TACTTGGAGG TCAAAAGAAA
  AGAATCTGTT CTTTCCTTCC ACTGTGGGTT TGAGGAATCT GGCTCAGGTC ATCAGGTTGT
  ATTGCAAGAG CTTTTATACA CTAGGTCCTC TCACTGGTAC GTTAATGGGG GGGGGGGGGA
  GTTGGGAAGG GTTAAGGGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60380483	NES15884386	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49407428					SNP	A	A	A	A	A	A	A	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380483	NES15884386	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27209885 () rs orientation: forward

Symbol	Name	Function Class
1700125G22Rik	RIKEN cDNA 1700125G22 gene	within coordinates
Cpgi13018	CpG island 13018	1529 bp distal
Ect2	ect2 oncogene	1914 bp upstream
Rr374716	regulatory region 374716	within coordinates
Rr574352	regulatory region 574352	1893 bp distal
Rr574353	regulatory region 574353	1695 bp distal
Rr574354	regulatory region 574354	1002 bp proximal
Tssr28601	transcription start site region 28601	1705 bp downstream
Tssr28602	transcription start site region 28602	1676 bp downstream
Tssr32836	transcription start site region 32836	1894 bp upstream
Tssr32837	transcription start site region 32837	1881 bp upstream
Tssr32838	transcription start site region 32838	1860 bp upstream