rs49404731 SNP Detail

Summary

• ID
  rs49404731
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58789325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCGTAACTC TATGGGCCAA TAGTGATTTA AGCAGCAGGG
  GCTATGACTC AGTGGCATAG CACTTGACCA TCATGTGCAA GGTCCCTGGC ATTTAAACTC
  Y
  AGTACCTCCC TCCCCCAAAA AACCTAGGCA AACAAAATAC AGGTAAAAAT CCAATAGAAT
  TGAAATCTAG GTCTATAGTA ACTGATGGTA ATAAGACAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135210110	ENSMUSSNP6977093	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49404731					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58789325 () rs orientation: forward

Symbol	Name	Function Class
Clrn1	clarin 1	Intron
Rr375038	regulatory region 375038	482 bp upstream
Rr577289	regulatory region 577289	965 bp proximal
Rr577290	regulatory region 577290	1552 bp proximal