rs49403868 SNP Detail

Summary

• ID
  rs49403868
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135707854 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTCTT CAGATGCACC AGAAGAGGAC
  G
  TCAGATCTTA TTATGGGTGG TTGTG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145774185	ENSMUSSNP258468	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49403868					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135707854 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm69125	predicted gene, 69125			within coordinates
Pithd1	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr602230	regulatory region 602230			993 bp proximal
Rr602231	regulatory region 602231			1304 bp proximal