rs49399164 SNP Detail

Summary

• ID
  rs49399164
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51634480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGTTACC GTGTACGGTT
  GCGCTTCGTG AACGCATGCA CCCTGTTTAT CTAGCTCACA GCTCTGCTGC TTTTTCTAGT
  CTGGGCTTGA AAAGCAACTG TGAAGGAATA GAAAAGGTCC AACCTCACTA GGTTCCTGAA
  ACTAAAGGGA GAGTCCTTAG AGCGAGCCCT GTGCTTGATA AGCTTGGAGA GGTGAAAGCC
  R
  TCATCATTAC TGTTCATTTG CCTTTCTTGT TTAATTTTTA CCTTTGTGTC TGCACTTGCT
  TTAATAGACT TTTTTTTGGG GGGGGGGGAG GTTGTTGCTG GAAATCGAAC TCAGGGCCTC
  ATGCATGCAA GGCAAGCAGT GTCTCACAGT GCTCTGGCCT CGTCTCCTGT CCCTTTCCTT
  TTTAATTTGA GGCTTGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60412591	NES15913916	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49399164					SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60412591	NES15913916	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51634480 () rs orientation: forward

Symbol	Name	Function Class
Maml3	mastermind like transcriptional coactivator 3	Intron
Rr576380	regulatory region 576380	862 bp proximal