rs49393499 SNP Detail

Summary

• ID
  rs49393499
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127930953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTCTAATT CTCTGCACTT TGGACAATTG TGGGTCTCTA
  TGTTAATCAC CATCTGTTGT GAAATAGAAG CTTCTCAAGG CCTTCACCTT CCAGGCTTCC
  R
  TTCCTCCCTT GGATTATAGA AGGTTGAGAA TTCATTGACC TGTATGTTTA ATGATAAGTC
  ATTAGGAGTC AATTTAATAC TGTGTCCACT TAGAAAATA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147551120	ENSMUSSNP611101	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320501500	CHEV_2_127914769	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49393499					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127930953 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	Intron
Gm23101	predicted gene, 23101	891 bp upstream
Rr564641	regulatory region 564641	1698 bp distal
Rr564642	regulatory region 564642	585 bp distal