rs49386221 SNP Detail

Summary

• ID
  rs49386221
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:67512715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGACCAATA CCTGTGAGCC
  CATTGCCCGA CATTGGCAGA CCCCGCCTGG GCCATTTGTG TCGCAGACCG TCATCTTGTT
  GGTGGGGCAT GTACAGTTGC TCTGAGCCGT GCAAAAGCGG GTCGCCATCG CCAGCAGTAG
  CAGTAGCAGC GGTGCTAGAT CCAAGCCCCT CGCCATGGTG GGGTGGAGTA GAATGGACCT
  M
  CAACTACAGA CCAGAGGCAG GGATTCTGAA GGATCAGGCT GGGTAGGACA CTGCAGGCGA
  CTCCTGCCGG GCTTTTCCCT CCAGCTCTTA TAAGCTCCTG TACCTGTAGG ACTGGTTAGC
  TAGTGACTCA CTCAATGGAA TTTGGGTGGC GCTCCCTATT CCCAGGTCCC GCGGAAGAAG
  CCGGCAGCCC TGAGCTGCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60894260	NES15959605	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	A		C
ss321812331	CHEV_6_67485725	CHEVERUD	SCREENING_POP	f	SNP											A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49386221					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60894260	NES15959605	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67512715 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	within coordinates
Gm42889	predicted gene 42889	within coordinates
Rr631667	regulatory region 631667	1935 bp distal
Rr631668	regulatory region 631668	919 bp distal
Rr631669	regulatory region 631669	476 bp distal
Rr631670	regulatory region 631670	54 bp proximal
Rr631671	regulatory region 631671	55 bp proximal
Rr631672	regulatory region 631672	227 bp proximal
Tacstd2	tumor-associated calcium signal transducer 2	mRNA-UTR
Tssr1871	transcription start site region 1871	1913 bp downstream
Tssr1872	transcription start site region 1872	950 bp upstream
Tssr61255	transcription start site region 61255	986 bp upstream
Tssr61256	transcription start site region 61256	505 bp upstream
Tssr61257	transcription start site region 61257	34 bp upstream
Tssr61258	transcription start site region 61258	52 bp downstream
Tssr61259	transcription start site region 61259	97 bp downstream