rs49385461 SNP Detail

Summary

• ID
  rs49385461
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132294727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGATAAA AACCCTGGGG
  CTCTGAATTG AGGAGAGATT CTCTTAGGGT GGTGGGTTAC ACCACTGAGA CCGGAGTCCT
  GCTCCCATGA CTCTAGTGAC CATGCTTTCC CTCCCGCCAA TCTGGAGGCT TCTTCCCAAA
  AGATCCAGTT GTCGCAGTGC AGGGCGGACT TGTCACTTAT TGGCAGGAGG AACACTGTGA
  R
  GTCACTGGGA AGGGAGTTAG CTCCCTCCAC CATTGAAAGG ACTGTTACCG CTCTGAACCT
  GGTAAGTGCC GGCAGCATCT GTCCTGCCGA TCTCACAGTG CTTACTTGCA AAAAGATGGA
  AATCCCGATG ACCAGGGAGG TCAGACAGCT GGTCTGGACG CCATGTTGGC ACTCTAGACA
  ACCTTGGAAT CTCTGTGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63333684	NES17507168	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49385461					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63333684	NES17507168	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132294727 () rs orientation: forward

Symbol	Name	Function Class
Ptafr	platelet-activating factor receptor	Intron
Rr601019	regulatory region 601019	1904 bp distal
Rr601020	regulatory region 601020	within coordinates
Rr601021	regulatory region 601021	1852 bp proximal
Tssr39390	transcription start site region 39390	906 bp upstream
Tssr39391	transcription start site region 39391	993 bp upstream
Tssr39392	transcription start site region 39392	1081 bp upstream
Tssr39393	transcription start site region 39393	1162 bp upstream
Tssr39394	transcription start site region 39394	1189 bp upstream
Tssr39395	transcription start site region 39395	1244 bp upstream
Tssr39396	transcription start site region 39396	1397 bp upstream
Tssr43688	transcription start site region 43688	48 bp downstream
Tssr43689	transcription start site region 43689	75 bp downstream