rs49384053 SNP Detail

Summary

• ID
  rs49384053
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121997326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCCAGGA CTTCTGATGC
  TCAGAGCTCA GCCTCATGTG ACTCTCCCAC AGTAGGTCCC ACCTCTTCTG AAGGTGGGCA
  GAACTTTGAT TTTATTTATT TTATATATGT GAGTACACCA TCGCTGCACA CCGTCGCTGT
  CCTCAGACAC ACCAGAAGAG GGCATCAGAT CCCATTACAG ATGGTTGTGA GCCACCATGT
  R
  GTTGCTGGGA ATTGAACAAT TTTGTGTAAA GAGACAGAAG GCAGAAGAGA TAGGCGTCTG
  ACCTTTAGCA GACAGGACTG TGTTTATTAT TGTTCATAGA GCGGGGCAGT CTCTCTCCCT
  TGGGAAACTG AGGAGTCAGT CAGAGGGAAA AGCTGGTTGT GACTCGCTAT AGTGGTGGGG
  TGAGGGTTTA GGAATGAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135737006	ENSMUSSNP3814403	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49384053					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121997326 () rs orientation: forward

Symbol	Name	Function Class
D3Jor1	DNA segment, Chr 3, Barbara Jordan 1	169 bp proximal
Gm43158	predicted gene 43158	within coordinates
Gm46822	predicted gene, 46822	within coordinates
Rr584257	regulatory region 584257	897 bp distal
Rr584258	regulatory region 584258	32 bp distal