rs49383354 SNP Detail

Summary

• ID
  rs49383354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147511415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACCCATAT GTCCAGACCC CTTTGGAGTG GTGGGGGGTG
  AGGGAGGGTC CTGCCTGGCA CTTCTGTAGG TCAGAGGACA ACTCTAAGGT ATAGATTCTC
  Y
  TCCTTCCACC TTGTGAGATC CACAGATCAA ACTCAGATTG CAAGTCCTGT GATTGTTTGC
  CTCTACTGGC TGAGTTATCT CAAGACTCGA AAATGATTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147959113	ENSMUSSNP4131260	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321414620	CHEV_4_146801067	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49383354					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147511415 () rs orientation: forward

Symbol	Name	Function Class
Rr398813	regulatory region 398813	903 bp upstream
Rr398814	regulatory region 398814	1812 bp upstream
Rr604485	regulatory region 604485	739 bp distal
Rr604486	regulatory region 604486	825 bp distal