rs49382549 SNP Detail

Summary

• ID
  rs49382549
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30171975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGGAAGAG AGACTCACTT
  GTGTAGAAGT TTGATTTCAA GAAAACACAT CAGATAATAA TTTCCCCAGT GGTTGCTAGT
  GTGCTCATGT GCGTGTTCAC ATGTGTAGAG GTCATGCCTA GTACTGTCCC TCAGGAACAG
  TACTCCTTGA TTTTTTTGAG AGAAAATCTC TGGCTGGTCA GAAACTTCCT GAGGATGCTA
  M
  GCCGGCTTAG CCAGGGATCC TGGAGATGAA CATGTCTCTG TCTCTCCAGG ACTAGGGTTG
  GAAGTGCAAG CCCATGCCTG TGTTTTAGGG TTGCTGTTGT TGTTGCTGCT GCTGCTCTGT
  TTCCATGTGG ACTCTGGGGG ATCAATTCCA GGTTCTCCGG TTGCAAGGCC AGCCCTTCAC
  CTGCTCAGCA CCTCCATACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134729136	ENSMUSSNP6668591	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49382549					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30171975 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574719	regulatory region 574719			890 bp proximal