rs49374671 SNP Detail

Summary

• ID
  rs49374671
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145811321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTATTACG GTCATTTTTT
  TTTTTCACCC TCACTTTATA AGGTCGGGTC ACTGATGTGG GAGCTTGGGG AACAGTGGAC
  ATACTCTTAA CCTCCACACC ACAGTGTCCC TCAGATTGCT GTCTCATTAT AAATATATCA
  CAACTAGGGT TTCTATTGCT GTGATGAAAC ACGGTGCTTG ACCAAAGGCA AGTTGGGGAG
  S
  AAAGGGTTTA TTTGGCTTAC ACTTCTACAT CATAGTCCTC CCACATCAAC CACTAATTAA
  GAAAATGCCC TTCAGCTGGA TCTCATGGAA GAATTCTCTC AGCTGAGGCT CCCTCCTCTC
  TGATGACTCT AGCTTGTGCC AAGTTGACAT AAAACTATCC AGCACGCAAA TAGAACCACT
  TAAAACAATG GTCTTGGACG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136042027	ENSMUSSNP6345622	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321009512	CHEV_3_145768530	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49374671					SNP	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145811321 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnai3	dynein axonemal intermediate chain 3			Intron
				Noncoding-Transcript-Variant
Rr586924	regulatory region 586924			1579 bp proximal