rs49372789 SNP Detail

Summary

• ID
  rs49372789
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87083025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCA AGATAGCTTT ATCTTCAGGC
  C
  TGGAACTAAG GCACACAGCT CTAGT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135455085	ENSMUSSNP5168328	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320831256	CHEV_3_86979640	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49372789					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87083025 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13330	CpG island 13330	681 bp distal
Gm64310	predicted gene, 64310	within coordinates
Kirrel1	kirre like nephrin family adhesion molecule 1	971 bp upstream
Rr579455	regulatory region 579455	1551 bp distal
Rr579456	regulatory region 579456	1179 bp distal
Rr579457	regulatory region 579457	481 bp distal
Rr579458	regulatory region 579458	21 bp proximal
Rr579459	regulatory region 579459	107 bp proximal
Tssr33927	transcription start site region 33927	1233 bp upstream
Tssr33928	transcription start site region 33928	1140 bp upstream
Tssr33929	transcription start site region 33929	1063 bp upstream
Tssr33930	transcription start site region 33930	1039 bp upstream