rs49368739 SNP Detail

Summary

• ID
  rs49368739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17060816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCTCCGA ATCTCTGTTC
  CGTCTCTCCA GCCCCATATG GCTGTATTTG TGTGCATGTA GGCCTGTGTA CATATCTTCT
  GTATCTCCAG CCCCAGACCT TCCCATTGGT TACTAGACCC AGATTCTATT TGTCTTGCAA
  ATTCACTACA AATAAAACTG AACCCACTGC CTATCTCAAG CTCTGCCTTG CCCTCTTTCA
  Y
  TTAGTACAGA AGGAAGGTAG AAGGTCTATA CAGCTGCAAT ACAGCACAGT CCAACAATGT
  GAGAAGGAGT CCTAACAGAT TCTAACAGAT TTCTTTGATC CTCAGTCCAA CATCACCTTC
  CCTTTAGCAT CACTGGCAGG TCCTTCTAAC TCTCCAACCC CATGCTTGCC TCATTTGGCC
  CTCAATATAA TTCACGTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60866976	NES15986534	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49368739					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60866976	NES15986534	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17060816 () rs orientation: forward

Symbol	Name	Function Class
Gm15473	predicted gene 15473	within coordinates
Rr626752	regulatory region 626752	235 bp distal
Rr626753	regulatory region 626753	1300 bp proximal
Rr626754	regulatory region 626754	1660 bp proximal