rs49365900 SNP Detail

Summary

• ID
  rs49365900
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152592091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATGAATG AAAAGCATCT
  CACAGGACTG GAGAGGTGGC CTAGTGAGGC AGAACTTGCT GTATATGCCT AGGAACCTGA
  GCACAGGTGT GACAACCTGA GTTCAAATCC CCAGATCCCC ATAAAGCCAG ACATGAAGGG
  TGAGCACTTA TAATGACAGA CAGCATCCCT CCCCTCAGCA AGATGGGAGG TGGAGACAGG
  R
  TCCACTCGGA ACCTCAGGAA GTCTGGCATC TGGAACTGTC CTAAACAAGG TAGAAGTTGA
  GGACTGGCAT CTGAGGTTGT CCTCTGACTT CAACAAGCAT GCTGTGGAGT GTACATACTT
  GAAACATACA CACACACACA CACACACACA CACACACACA CACACATGGG TGGATTTAGA
  GGACCTTCCA CACAGTTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136104387	ENSMUSSNP4412649	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss321029039	CHEV_3_152549418	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49365900					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152592091 () rs orientation: forward

Symbol	Name	Function Class
D3Mit322	DNA Segment, Chr 3, Massachusetts Institute of Technology 322	98 bp proximal
Rr587620	regulatory region 587620	404 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron