rs49364084 SNP Detail

Summary

• ID
  rs49364084
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87656205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAG CTCCCTGGAG GTCTGGAGGC
  G
  TGTCTGCTGG TTTGATCTAG GAGGT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135467982	ENSMUSSNP4487371	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320835326	CHEV_3_87552820	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49364084					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87656205 () rs orientation: forward

Symbol	Name	Function Class
Lrrc71	leucine rich repeat containing 71	273 bp upstream
Pear1	platelet endothelial aggregation receptor 1	mRNA-UTR
Rr579535	regulatory region 579535	66 bp distal
Rr579536	regulatory region 579536	96 bp proximal
Rr579537	regulatory region 579537	304 bp proximal
Tssr33946	transcription start site region 33946	343 bp upstream
Tssr33947	transcription start site region 33947	330 bp upstream
Tssr33948	transcription start site region 33948	300 bp upstream
Tssr33949	transcription start site region 33949	283 bp upstream
Tssr33950	transcription start site region 33950	268 bp upstream