rs49361570 SNP Detail

Summary

• ID
  rs49361570
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89261556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACTA GGAGTACTAT GGAGATTTTC
  Y
  TGAGAGCCCC GAGTGTTTTC AGCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
ss133371407	ENSMUSSNP3293201	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss321851862	CHEV_6_89234568	CHEVERUD	SCREENING_POP	f	SNP			C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
rs49361570					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89261556 () rs orientation: forward

Symbol	Name	Function Class
4930512J16Rik	RIKEN cDNA 4930512J16 gene	within coordinates
Rr379731	regulatory region 379731	378 bp upstream
Rr634091	regulatory region 634091	1303 bp distal
Rr634092	regulatory region 634092	621 bp proximal
Rr634093	regulatory region 634093	1537 bp proximal
Rr634094	regulatory region 634094	1763 bp proximal