rs49358383 SNP Detail

Summary

• ID
  rs49358383
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40496987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAACAAAG TAATGGGTTT
  GTTTGGTTTT TTTTTTTTTT TACAAGAGAA ACAAGACATG CGGTGGCACA TTTTAATCCC
  AGAGCTTGGG AGGCAAAGCA AGCATATTGT TGTGAGTCTA AAGGAAAAAT CTTAAGAATT
  TGTGTTGAAG GCCTCAATCT ATGAGAGATA ACTCATGTGG TCTGCTCAGC CTGCCCTGTG
  Y
  GTTGGCAGTC CAGTGGTCAA CCGTGTTAGC TGCAATTGCT GTGCCATGAA GAGGAGTCCA
  TCTTAGCCGA ACAGAGCGTC AGAAGAGCGG AGCTGACACT TAGGTGACCA CCATGTTCAT
  ATCCAGTCGT TTAAGGTGCT GACTCCCATG ACCACCAACA GAAAGAGTGC TGCCAAATCC
  CTGCCATCTT CGATCCCGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
ss60393564	NES15898238	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
rs49358383					SNP	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393564	NES15898238	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40496987 () rs orientation: forward

Symbol	Name	Function Class
Gm30184	predicted gene, 30184	within coordinates
Rr374853	regulatory region 374853	875 bp downstream
Rr575816	regulatory region 575816	1103 bp proximal
Rr575817	regulatory region 575817	1596 bp proximal