rs49356946 SNP Detail

Summary

• ID
  rs49356946
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148133228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCT GGCTGCCTGG AAGTTAGTAT
  W
  CTACTAGCGG CCTTCAGATG AAGAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147990665	ENSMUSSNP118567	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
ss321416667	CHEV_4_147422880	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49356946					SNP	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148133228 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mthfr	methylenetetrahydrofolate reductase			Intron
				Noncoding-Transcript-Variant
Rr604562	regulatory region 604562			1570 bp distal
Rr604563	regulatory region 604563			within coordinates
Rr604564	regulatory region 604564			1699 bp proximal