rs49354456 SNP Detail

Summary

• ID
  rs49354456
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135900497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAG AGAGAACCCT TTCATTTTCC
  S
  ACTCCGTGAA GTAATCTCGC CTGCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147560417	ENSMUSSNP4486988	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321354370	CHEV_4_135729101	CHEVERUD	SCREENING_POP	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49354456					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135900497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15100	CpG island 15100	within coordinates
E2f2	E2F transcription factor 2	Intron
Rr367754	regulatory region 367754	732 bp downstream
Rr398609	regulatory region 398609	1401 bp upstream
Rr602302	regulatory region 602302	782 bp distal
Tssr39670	transcription start site region 39670	898 bp downstream
Tssr39671	transcription start site region 39671	791 bp downstream
Tssr39672	transcription start site region 39672	759 bp downstream
Tssr39673	transcription start site region 39673	744 bp downstream
Tssr39674	transcription start site region 39674	607 bp downstream
Tssr39675	transcription start site region 39675	433 bp downstream
Tssr39676	transcription start site region 39676	326 bp downstream
Tssr39677	transcription start site region 39677	230 bp downstream
Tssr39678	transcription start site region 39678	8 bp downstream
Tssr44029	transcription start site region 44029	863 bp upstream
Tssr44030	transcription start site region 44030	582 bp upstream
Tssr44031	transcription start site region 44031	139 bp upstream