rs49353889 SNP Detail

Summary

• ID
  rs49353889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:32586177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCATTTAC TCGTTGTAAA
  TACACTATTG TGCAAAAAAA AAAAAGTTTC ATTCAATTGA ATTGCTAGTG TTTACTGAAT
  TTTGTCTAGA CGCCATTTCT GTTGATGAAA TAAAGGCCTA TCATTCTACA TGGTCAAAGC
  TCCCCAATCC TTGCGTCACA CTGCGGCACA GACAGCCTCG AGCAATGCTT CTCTACAGAC
  R
  TTAGCTTGGA CCCTTCCCTG CTCCCTGGTT AATCTGATTA GAAATCTGAA GAATTGAACC
  ATGCTGGTTT TAATCTTAAG TTTTTAAACA AAATCCCCGT TGCACATGAG ATTAGATATC
  AAATATTAGA GCCATTTCCA GTTTCAATAT TCCACTGTAG CTATGCAGCT TGTTGCCGTG
  GGTAAAGAAC ATTGTGTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss146162351	ENSMUSSNP4827387	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321072246	CHEV_4_32673152	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49353889					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:32586177 () rs orientation: forward

Symbol	Name	Function Class
Bach2	BTB and CNC homology, basic leucine zipper transcription factor 2	69 bp downstream
Rr590021	regulatory region 590021	341 bp proximal
Rr590022	regulatory region 590022	611 bp proximal
Rr590023	regulatory region 590023	1156 bp proximal
Rr590024	regulatory region 590024	1480 bp proximal