rs49351502 SNP Detail

Summary

• ID
  rs49351502
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148217303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTTAGGATA CAGTGATCAA AGGTTCCAAA AGACAACGCA
  GTGAACAAGG TTGTGCGGGT CCAGGTAACA GAGCCTTGAG AGGCCCCACA GATTCTTGGC
  Y
  CAATAGAGAG ACAAATAACA AATATCTTGT TTTCAGTCTT CAGTTTTAAG TTATCTGGAG
  TTAAGGCAAG TTCTTTCACC AGCAACAGAC AACTTTGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147923776	ENSMUSSNP5317039	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49351502					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148217303 () rs orientation: forward

Symbol	Name	Function Class
Gm39957	predicted gene, 39957	947 bp downstream
Rr566886	regulatory region 566886	1141 bp distal
Rr566887	regulatory region 566887	42 bp proximal
Rr566888	regulatory region 566888	127 bp proximal
Rr566889	regulatory region 566889	508 bp proximal