rs49350170 SNP Detail

Summary

• ID
  rs49350170
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137253994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTTTCAC CAATTAGCTC
  CCAAGGATCC TTGCTGACAG CAATTTATAG ATGAAAATCC AAACCAAATG AGACCCAGCT
  GTGAGACAAA GGCTTCTGTG GTAAAAACCA GAGAACAGAG TGGAAGCTTT CTGGGAAAAA
  AATGTTTGGG AACTCCTCTA AGCAGCCCAG GAGGCCGGCT CTCTGGGGAA TATGCTGCCT
  M
  GCTCAAGCTG TTTCCATTCT TGCTCCTTGG CTTTTTCTCC GCAGCCTGGT TCAGCTTTCT
  GCACGGAGCT CTGAGTCCCT TGGCCTTGAA GACTGAGCCT GAGCTTAAAA GCTAACACTT
  ATTCCACCTA ACCTCTTTGC CTTCTGGGTT TGTCCATATG AAAAGGATAC AGAAAAGGTC
  TCAGGCAGAA CTCTGAGGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61085537	NES16600954	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49350170					SNP	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61085537	NES16600954	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137253994 () rs orientation: forward

Symbol	Name	Function Class
D3Mit349	DNA Segment, Chr 3 Massachusetts Institute of Technology 349	1509 bp distal
Gm4861	predicted gene 4861	1812 bp downstream
Rr585946	regulatory region 585946	within coordinates