rs49345863 SNP Detail

Summary

• ID
  rs49345863
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154941045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAG GATCCCCGGT CTCAGAAAGT
  G
  GTGCCCTGCG GGCGTTCTCC GCTTA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148107653	ENSMUSSNP7108865	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321440204	CHEV_4_154230697	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49345863					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154941045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15447	CpG island 15447	within coordinates
Rr606279	regulatory region 606279	378 bp distal
Rr606280	regulatory region 606280	187 bp distal
Rr606281	regulatory region 606281	472 bp proximal
Ttc34	tetratricopeptide repeat domain 34	Intron