rs49344942 SNP Detail

Summary

• ID
  rs49344942
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153364204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGCCAAA TTCACAGGAA
  CACGGAGCCT GGCATCCTCT GTCCGGTGTA AGCGGAGAGC TGGGGCGTCT CTGAAGCCGC
  CTAGGAAACA CACTTCTGGG CGTGCCTGTG AGCATCGGCT GAGGTGGAAA GACTCGCTCT
  ATATGTGTCA CGGGCTGTCT CAAACAACCA CACAGCTACT GGCCCCCAAC CTGCTGCACC
  S
  AGCAGCCACC ACTAGAGGCC ACCACACGTA CCTCTGCACC TGAAACCCTT CATTAACATC
  CTCCAGATAA CTCAGAAGTG AGACTCACGT TGCGAGTGAA TGCAGTCTAC AGATACGCAA
  ATTCACACCT AAGGGAAGGT CTCAGTGCCC TGCCAACGCA TACACTGAAC AGAGGGCAAG
  GCCACTGTGG CTGTACAATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136110549	ENSMUSSNP6946975	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49344942					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153364204 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587719	regulatory region 587719			within coordinates
Rr587720	regulatory region 587720			5 bp proximal
Rr587721	regulatory region 587721			1104 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant