rs49343871 SNP Detail

Summary

• ID
  rs49343871
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126455696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTGTGTGT GTGTGTGTGT
  GTGTGTGCAT GTGTGAAACA TATAACTTAA TTCTTCTTCT TACCCCATGT ATTCTGTTTT
  ATGTTGTCAG TTTTCTGTTA GTGAAACACC AAAGCCTTGC ACCCTGTAAA GAGGTCTACT
  TAGTTCCTGT TCCATATCTG TTTTGATCTC TAGGGGCCTG AGAACATGGT ACCGCTTACC
  R
  TCAATGGGTA GAGTCATTTA CACAGGAGGA AGCAAGAAGA CCAATAGAGA TAGCCCATCA
  TGCTTTTGGT CTTGTGGTAA CCCATTTATT CCTCTGAGGT TTCAATCACT CTCATGAGAT
  GTGGTGTCTC TGGTGACTGA ACACCTCCCA CTGGGTCTCA TCTTTTAAGA GGTTCTAGTA
  CTGTTCAGTG TTGCTGTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135838311	ENSMUSSNP5987298	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320947083	CHEV_3_126364965	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49343871					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126455696 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43005	predicted gene 43005			332 bp upstream
Rr397996	regulatory region 397996			within coordinates
Rr584671	regulatory region 584671			455 bp distal
Rr584672	regulatory region 584672			within coordinates
Rr584673	regulatory region 584673			1208 bp proximal