rs49343006 SNP Detail

Summary

• ID
  rs49343006
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141855845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAC TGAGCTAATT CAGAGACCAG
  K
  GTAAGGCACT TGGGGGCATT TTCTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147749369	ENSMUSSNP6161815	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		G
ss321392951	CHEV_4_141684449	CHEVERUD	SCREENING_POP	f	SNP			G		G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49343006					SNP	T	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141855845 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm35581	predicted gene, 35581			340 bp downstream
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr604000	regulatory region 604000			1323 bp distal
Rr604001	regulatory region 604001			829 bp distal
Rr604002	regulatory region 604002			1628 bp proximal