rs49342983 SNP Detail

Summary

• ID
  rs49342983
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108424353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGCTCGGC CCTCTTGTCC TGAAACCCCC ATCACTGACC
  TCTCAGCACC TGGATCCCTG AAAACTGCCA GAAGTCAAGG TTCAACTGTC CTAGTGTAGT
  S
  TAATAGACTT GGAGGAACCC TGTCCCTAAG GCTTTCAGAA CTTTCTTTCT CTTCCAAGGC
  TTCTCTCATG GTGGTAACTC TCCTGCCTGG GGCCTTCAA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133502601	ENSMUSSNP3402217	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49342983					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108424353 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636108	regulatory region 636108	320 bp distal
Rr636109	regulatory region 636109	within coordinates