rs49342402 SNP Detail

Summary

• ID
  rs49342402
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:71522745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTTCTTA ATAAGAAAAG
  GTTTTAAGAG ATGCAGTGTG GCCTGCAGTT CAGCTGCTTG GTCATTTTCA GGACATTCCT
  GAAAGCAAGA GTTCAAGGGC AGACTAGACA GTGGCTCAGA AAGCAAAGAT TTTTCGGGAA
  AGTCTGGGTG TTGTAGTTTC TGAGACATTA CCATGCATTC GTTTTAAAAA TTTAATCCCC
  R
  CATTAAAAAT GAAAGTAACA TTGTAAAAGT AAAGACTTTA GAGTTGGCTG TTCATCATCC
  TGCAAGGTCT GTGTCTTGCC CTTAACTTTT TCCGGTGTGT TATTTTATGT GAAATGGAAG
  TTGGATGTAA ACTTGATGAG ATCCAAGTTA AACTAATTTA GCAAGAATGT CTGGGCGCGT
  GGTGGCGCAC ACCTTTAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133276482	ENSMUSSNP6566856	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49342402					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71522745 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700040L08Rik	RIKEN cDNA 1700040L08 gene			1647 bp upstream
Chmp3	charged multivesicular body protein 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr399696	regulatory region 399696			1793 bp downstream
Rr631970	regulatory region 631970			1834 bp distal
Rr631971	regulatory region 631971			1157 bp distal
Tssr57031	transcription start site region 57031			1893 bp downstream
Tssr57032	transcription start site region 57032			1863 bp downstream
Tssr57033	transcription start site region 57033			1804 bp downstream
Tssr57034	transcription start site region 57034			1775 bp downstream
Tssr57035	transcription start site region 57035			1394 bp downstream
Tssr57036	transcription start site region 57036			521 bp downstream