rs49341495 SNP Detail

Summary

• ID
  rs49341495
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138450166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTG TGTCTGTGTG TTTTGCATGT
  Y
  TGGGGGTACA TGTGTAGGCA GGTAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147655229	ENSMUSSNP6340105	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321376504	CHEV_4_138278770	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49341495					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138450166 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr602997	regulatory region 602997			659 bp proximal
Rr602998	regulatory region 602998			1154 bp proximal
Rr602999	regulatory region 602999			1841 bp proximal
Rr603000	regulatory region 603000			1991 bp proximal
Ubxn10	UBX domain protein 10			Intron
				Noncoding-Transcript-Variant