rs49339658 SNP Detail

Summary

• ID
  rs49339658
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:20561699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTATCTTG GGTAGTCTGA
  GATTCTGGGT TAATATCTAC TTATCATTGA GTGCATACCT TATGTGTTTT TTTGTGATTG
  GGTTACCTCA CTCAGGGTGA TATTTTCTAG TTCCATCCAT TTTCCTAAGA CTTTCATGAA
  ATCATTGTTT TTAATAGCTG AGTAGTACTC CATTGTGTAA ATGTATCACA TTTTCTGTAT
  Y
  CATTACACTG TTGAAGGCCT TCTGGGTTGT TTCCAGCTTC TGGCTATTTT AAATAAGGCT
  ATTATAAATA AGGATCATAT GTCCTTATTG GAGCATCTTC TGGGTATATG CCCAGGAGTG
  GCATTGCTGG ATCCTCAGAT AGTACTATGT CCAATATTCT GAGGAACCTC CAAACTGATT
  TCCAGAGTGG TTGTACCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134672189	ENSMUSSNP1418505	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49339658					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20561699 () rs orientation: forward

Symbol	Name	Function Class
Gm31466	predicted gene, 31466	1329 bp upstream
Rr574081	regulatory region 574081	1724 bp proximal
Rr574082	regulatory region 574082	1853 bp proximal
Tssr32748	transcription start site region 32748	1325 bp upstream
Tssr32749	transcription start site region 32749	1310 bp upstream