rs49338595 SNP Detail

Summary

• ID
  rs49338595
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160760957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAATAGCC TAAACATCAG AACTGATTCA CTGTGTTGTC
  TATACCAGAG AGTTATTAGA CATTTACAGA TATCACCACA AATCTATTGC AAAAACAAAG
  T
  TTTTTTTTTT TTTTTTTTTT TTTGGTTTTT CGAGACAGGA CTTTTCTGTG TAGCCTTGGC
  TGTCCTGGAA CTCACTCTGT AGACCAGGTT GGCCTCGAA                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss145902300	ENSMUSSNP4085494	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs49338595					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160760957 () rs orientation: forward

Symbol	Name	Function Class
Rc3h1	RING CCCH (C3H) domains 1	Intron
Rr421728	regulatory region 421728	618 bp proximal
Rr421729	regulatory region 421729	631 bp proximal
Rr421730	regulatory region 421730	928 bp proximal
Rr421731	regulatory region 421731	1165 bp proximal