rs49338255 SNP Detail

Summary

• ID
  rs49338255
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102110663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCACACTGG GAGTTTTGGC
  TATTCATAGT GGGAGTCGCC AACCTTTAGA AATGCTAAAT GCTCCTGGAT ATTGCTTTGA
  AATGTAGAAT AAAACAGTTT CCTCCCACAC ATCAAAGCCC CAACCATATC ACACTGATTT
  AATTCAATTC TAAAAACTCT AATTAGTGGT TACATAAAAT GGCTAATTAT GCCTCCCTGG
  S
  CTCCGACGGT TTCTGCCATG GCACTTACAG AGCCTAGGAG CTGTGTAATC AACACGCCCA
  CTAGAAGGAG AAGGCTAATT AGTATTGTTG ATTGGTGACA TAACTTATAA TATTTTTTCA
  GCAAACCCCG TAAAACGTAT AAACACGTCA GTGAAAACAC TAGTCTTCAC AGCTAACTTT
  TGGAATTCGC CTGTAAGGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135554826	ENSMUSSNP4964373	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss320854826	CHEV_3_102007270	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49338255					SNP	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102110663 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13625	CpG island 13625			262 bp proximal
Gm16160	predicted gene 16160			within coordinates
Rr582207	regulatory region 582207			within coordinates
Rr582208	regulatory region 582208			606 bp proximal
Rr582209	regulatory region 582209			709 bp proximal
Rr582210	regulatory region 582210			1336 bp proximal
Tssr34830	transcription start site region 34830			1229 bp downstream
Vangl1	VANGL planar cell polarity 1			Intron
				Noncoding-Transcript-Variant