rs49334885 SNP Detail

Summary

• ID
  rs49334885
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59785165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TACTTAAACC TTATTTCTAA AATAATAATT GATGTTTGCT
  AATGTTTACA ATGCACAGTC CAGGACTGAA ACAGTAAGTT CAATACCAAA GATTTACTTA
  G
  TTCACAGAAA AAAAAAATTG TTGCATGTTT TCCACGTGCT AGGTGCTTGC TCTACATTAG
  TTTATGCCTT CCTGTGATTT GTATATGGGA AGCAGAGGTG T                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146403085	ENSMUSSNP4822064	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49334885					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59785165 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14350	CpG island 14350	1057 bp distal
Inip	INTS3 and NABP interacting protein	Intron
Rr376572	regulatory region 376572	within coordinates
Rr398295	regulatory region 398295	1082 bp downstream
Rr593135	regulatory region 593135	1368 bp distal
Rr593136	regulatory region 593136	809 bp distal
Rr593137	regulatory region 593137	1129 bp distal
Rr593138	regulatory region 593138	1298 bp proximal
Rr593139	regulatory region 593139	1670 bp proximal
Tssr41950	transcription start site region 41950	1289 bp upstream