rs49332682 SNP Detail

Summary

• ID
  rs49332682
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27284555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAGACCT AAGACAAAGG
  AGCATGGTTA TGAAGTCTGT GGTGGCCAGA TGAGAGGGCT TTGAGAGATT TGGGGGGGGG
  GGGGCTCATG CTCTCACCAA TGAAAACAAG ATTGAGGGCA GAGGATCCCA GGAGTCTCCA
  GCAACGTGGT AGGTGCTCCC CTCCCCTCAG CAGAGAGACC CGCTGCCACA GCATCCCCTG
  Y
  GGGTGGCTTT GCTCCATGTG CATCGGGCCT TTGGTGATGG TTTTTTATCT CTAGGAGCTG
  GAGGGCGAGG GTTAGGGCAG CCCGGAAATG GAATCACCTC ATGGGATTCG TATACATGCG
  CTGCCTGTGT GGTCTGCAGC GGTCAGGGAC AGGCCTGGCA GCTAACTCAC ACACATGCCT
  TTATTCTAGA ACATAGGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60380258	NES15882808	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49332682					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380258	NES15882808	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27284555 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr574372	regulatory region 574372			1200 bp distal
Rr574373	regulatory region 574373			1304 bp distal
Rr574374	regulatory region 574374			1281 bp distal
Tssr28617	transcription start site region 28617			1096 bp upstream
Tssr28618	transcription start site region 28618			1131 bp upstream