rs49331145 SNP Detail

Summary

• ID
  rs49331145
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15791000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATAAAAT TGGGGAAAAT
  GTTAAATTCG GCATCTGGAA AGAAGTTTTC CATCATTTTT ATTCAAATAC TTATTTTCAT
  TAAAACTAGA GGACTTTTTC ACATTTGTTT TGTCCTGACT ATAAGAGGCA TTATTACCAA
  AGTATGCAGA CTGCTTACAA ACAAAACAAT GCTTTCTTAA TAAATGCTAT ATTTATTTAC
  K
  TACGGGGCAG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TTGCACTTGT
  GAAGTGCAAA ACTTATCAGA GTCAGTTCTC TCTTACCACA TGGGTCCTGG GAATCAAACT
  TAGGTCACCT ACCTTGGTGG CAAGTACCTT TACCTTCTGA GCTTTATAGA AATTCTTCAA
  AATGCTTTTT GTGACTAAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss133007023	ENSMUSSNP4353478	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321752329	CHEV_6_15741001	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49331145					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15791000 () rs orientation: forward

Symbol	Name	Function Class
Mdfic	MyoD family inhibitor domain containing	Intron
Rr399575	regulatory region 399575	537 bp downstream
Rr626687	regulatory region 626687	445 bp distal
Rr626688	regulatory region 626688	685 bp distal
Rr626689	regulatory region 626689	1608 bp proximal