rs49329988 SNP Detail

Summary

• ID
  rs49329988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19528644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCACTTT GAGATTCAGC
  TAAGTAGAGG GTGGGCTACT TGAATTGCAA ATGCATGGGA GAGTGACTTA TTCAGTCAGT
  CTAAGAGAGA AAAACCTTTA TCAATTGTGT ATGTTTAAAG GAGGGACAAA AATAAGAATC
  TGCAACCTAT GGTGGGCAGA AGTCTACAGT GGGTACTACA GTCGTAATTT GTCTTCTGAG
  Y
  ACTGTGCATC AGTTTATGTT AAATCCATTC AACATTCGAG TCTCCCTAAT AGTTTTATTT
  TTATTTTTTA CATTTCCCTA CAGACAAACG CACTGACTCA GACTTTTCTC CCAAGCCTAC
  TATTTTCCTT CCTTCTGCTG CTGAAACAAA TCTCCATAAG GCTGGGACCT ACCTTTGTCT
  CCTTGAAAAG TTCTTTCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52626594	NES15515266	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49329988					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52626594	NES15515266	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19528644 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	84 bp upstream
Tssr118549	transcription start site region 118549	1735 bp downstream
Tssr118550	transcription start site region 118550	1015 bp downstream
Tssr118551	transcription start site region 118551	241 bp downstream
Tssr118552	transcription start site region 118552	1482 bp upstream
Tssr121589	transcription start site region 121589	1208 bp upstream
Tssr121590	transcription start site region 121590	126 bp upstream
Tssr121591	transcription start site region 121591	715 bp downstream
Tssr121592	transcription start site region 121592	1295 bp downstream