rs49325416 SNP Detail

Summary

• ID
  rs49325416
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94566920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATTG AATAGGCAGT ACCACTAGAG
  C
  TAGCAATTCG TTTTGGTGAA CATCT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135506959	ENSMUSSNP3251473	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320840510	CHEV_3_94463535	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49325416					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94566920 () rs orientation: forward

Symbol	Name	Function Class
BC021767	cDNA sequence BC021767	976 bp downstream
Cpgi13486	CpG island 13486	1232 bp distal
Gm15234	predicted gene 15234	within coordinates
Gm65306	predicted gene, 65306	1215 bp upstream
Rr580673	regulatory region 580673	1226 bp distal
Rr580674	regulatory region 580674	875 bp distal
Rr580675	regulatory region 580675	648 bp distal
Rr580676	regulatory region 580676	730 bp distal
Rr580677	regulatory region 580677	within coordinates
Tssr34401	transcription start site region 34401	735 bp upstream
Tuft1	tuftelin 1	741 bp upstream