rs49324905 SNP Detail

Summary

• ID
  rs49324905
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55552419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACACCAAG AGCAGAGCCG
  ACTGTCCCCC AGTCACACAC TAGCTACTAT TTCATTGTCA GAGTCTGGTG GACAGAGGAA
  CAACAAGCAT AGGCTCAGAA ATAGTCTTAA TCCCAAACCT TGTATCCTTG CAAGGTACGT
  AAATGCTATC TTGTTGGGGG TGAGAAAAAG TCAATACCAG TCCGTTAGAT CAAAATAAAA
  M
  CTGGATCAAG TGAAGAACAG AATTATCACC GCTTACCCAT AACTGAACCA CTTTTTATAG
  AGTTTCAAAG TTTCTTTTAG TTTAATTTTC TAAGTGATTC CACAAGCTAG GAGAATAAGC
  ATCATCAAAG ACCACCTCAC AAATACTAAA ACAAGGGGCA AAGAATGCCA TGGACCACAT
  GAACCTAAGT GGTTGTAGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	DBA/2J	KK/HlJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60413532	NES15908269	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C		C	A	C
ss135189242	ENSMUSSNP4761290	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	DBA/2J	KK/HlJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49324905					SNP	C	C	C	C	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60413532	NES15908269	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55552419 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nbea	neurobeachin			Intron
				Noncoding-Transcript-Variant
Rr576982	regulatory region 576982			457 bp distal