rs49323294 SNP Detail

Summary

• ID
  rs49323294
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120897237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGAATGAAA CGCTCACACA GGAAAAAAAA TATGACACAT
  TTAATCTCCA GACCTATAAG ACTGAGTTTC CCGAATTTCT AAGAATTTAA ACTTTAATTA
  Y
  AGATAATTAA AATCCCTATA TAAATTCTGG GGATTTCCTT TGATTGCAGC AATTTTTCCA
  ATGATTTTTG GATGCTGTTT TTAGAGAAAG ATAAATAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135713479	ENSMUSSNP1678415	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49323294					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120897237 () rs orientation: forward

Symbol	Name	Function Class
Gm65499	predicted gene, 65499	within coordinates
Rr397968	regulatory region 397968	1254 bp upstream
Rr584003	regulatory region 584003	1116 bp distal
Rr584004	regulatory region 584004	928 bp proximal
Rr584005	regulatory region 584005	1419 bp proximal