rs49317843 SNP Detail

Summary

• ID
  rs49317843
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:25644085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAGATGG TTTATCTAAG
  GCGGCAAATT TTCATCTTAT CTCCCCAATA ATGCTAAGAA AATGAGACCT GTTGTAGCTA
  GCATTTCCTC TACAGCCAGA ACACACTGGT GAGAAGGACA AAGTGCCCTG CACTGCCCCA
  AAACCAGAAC CACCACAGGC TGGCGAGTAG TATGCAGAGC CTCAAAATAA GCAGGGAAGG
  R
  AGTTCCTGAT TCCTCTGCTA TCCGCTCTTC TCTTCCAGTT TTACCCTGGC CCACCCCTAG
  ATGGAGAGCC CGCCCAACTA GTGTGTGTAA AGTCCTTACT CAGACCTAGG AAACGCATGA
  AGCACCAGCT ACTTTCTACC CAGCTCCTGC TCACCTGGGC CCTTCCGAAA GTTGGAGAGC
  TTGGAGCAGC TTTGCTTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60584148	NES16331100	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49317843					SNP	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60584148	NES16331100	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:25644085 () rs orientation: forward

Symbol	Name	Function Class
Tacc1	transforming, acidic coiled-coil containing protein 1	483 bp downstream