rs49312296 SNP Detail

Summary

• ID
  rs49312296
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:8241869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTCATCA GCACCCTTAC
  TGAAATGTGG TCCCCAGAGC CAAGGCCACT ACACAGTTGT GTTAGGACAA CTCAATCAAA
  ACAAACATCA GCATCTCAAA ACAAAAAACT ATAGCACTAA AGATAACAAG GTTAGGGCTG
  GAGAGATGGC TCAGCGGTTA AGAGCAGTGA CTGCTCTTCC AGAGGTCCTG AGTTTAAATC
  Y
  CAGCAACCAC ATGGTGGGTC ACAACCATAT GTAATGGGAT CTGACCCTCT CTTCTGGTGT
  GTCTGAAGAC AGCTACAGTG TACTCATATA CATAAAATAA GTAAATAAAT CTTTGTTTTA
  AAAAAATAAA AAGATAACAA GGTTCTTTTC TGGTCACTGT CTTACCTGGC AAAGTTTTGT
  TTGTTTTCAG GGAGCATTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132964778	ENSMUSSNP1393510	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49312296					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8241869 () rs orientation: forward

Symbol	Name	Function Class
Rr626362	regulatory region 626362	873 bp distal