rs49308800 SNP Detail

Summary

• ID
  rs49308800
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:18618481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCCCCAC CTGCAGGAAG
  TAAGTTTGTG CCAAAGCCCT GGGCCCCTTA CCTATGCAAG TTCCTGTTAG GTTACACCAT
  CCCCCACTGA GATCTAAGCC TTGGAAACCC CAGGAAACAA CTGAATGTCC AGTCCTTTGT
  GCCCTTCCTG ATGAGAGAGC CTCTCTCCCC ACCTACTGAC ACTTAGCAAA GGCTCCATCA
  Y
  GGCCCCACCT CTGGTTAAAG GAGGAAGCTG GGTCTGGGTC GGAAAGTCCC GCCCAGGTGT
  GAAGCAAGCC CTTCCTCTGC CCACACCCTT CACCATGCCC AGAAGATAAA GTACACAGGA
  TGAGGGCCAG CTCATACACA GCCCTGCAGT CCTGTGCGGC ACGTCCAGCA TGTTGTTTGC
  CTGTGCTCTC CTTGCCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148463488	ENSMUSSNP2422606	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49308800					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18618481 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pglyrp1	peptidoglycan recognition protein 1			Intron
				Noncoding-Transcript-Variant
Rr642924	regulatory region 642924			within coordinates
Tssr64752	transcription start site region 64752			123 bp upstream