rs49307613 SNP Detail

Summary

• ID
  rs49307613
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:29122376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGCACCC ACAAAAGGTA
  CTGTTCTTTG CATGGGGTAG AAAGAATTTG ACAGAGATGG AGTCATTGTA AGAACAGAAA
  GGGTAAGGAG AACCCAGGGT CAAGTATATG ACTGTGCATC TGTTTTCAGA CCTGAGTCAA
  TAGACGTAGA GAGTGGTAAC CAACCACAGT CACCAAATGG AAAAGCCAGG ACACAAAAGC
  R
  AATAAAGATC AGCATTCTGG TAGTAAGAAA AGAAAGTAAG ATGGTAAGGT GGCTTCCAAG
  GTTTTAGTCA AAAAGTAAGG CCAGCTGGGT CATCTCTGGT TTGTAAACAT ATCAAACCAG
  CTCTATATTT GGGGCACTCA GGTTGCTAAC ACAATCACCA TGATGGGATT TTGTTATGGG
  AAGATACAAA GAAATATGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60381971	NES15888726	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49307613					SNP	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60381971	NES15888726	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:29122376 () rs orientation: forward

Symbol	Name	Function Class
Rr574657	regulatory region 574657	386 bp proximal