rs49305367 SNP Detail

Summary

• ID
  rs49305367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137691089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTG TTGGAGCTGA GAACCCACAC
  Y
  CCACCAGATG CACCCTGTTG TCCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147627578	ENSMUSSNP2210721	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321369367	CHEV_4_137519693	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49305367					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137691089 () rs orientation: forward

Symbol	Name	Function Class
Ece1	endothelin converting enzyme 1	mRNA-UTR
Rr602798	regulatory region 602798	205 bp proximal
Rr602799	regulatory region 602799	262 bp proximal
Rr602800	regulatory region 602800	639 bp proximal
Tssr39801	transcription start site region 39801	46 bp upstream
Tssr39802	transcription start site region 39802	696 bp upstream