rs49303160 SNP Detail

Summary

• ID
  rs49303160
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27211861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAAGATGG CATCACATCC
  CATTACAGAT GGTTGTGAGC CACCATGTGT TGCTGAGAAT TGAACTCGGG GACCTATGGA
  AGAGCAGCCA GTGTTCTTAA CTGCTGAGCC ATCTCATTAA CCCTCTTAAT CTTGCTGTTG
  TTAATCTTGG TCAGAGAAGC TTCCTTTTGC AGTGGGCAGA AATCAACAGA GAGACTCCTA
  S
  TGAGACAGAA AGCTTAAGAT AAATGCTCAG CTCTAACTCC AAAGCTCAGA GACCGAGGAT
  GAGAAGGATG GGGAGCAGAG GATGCAGAGG TGGAGGAGGA TGGGGAGCAG AGGATGCAGA
  GGTGGAGGAG GATGGGGAGC AGAGGATGCA GAGGTGGAGG AGGATGGGGA GCAGAGGATG
  CAGAGGTGGA GGAGGAAGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60380474	NES15884350	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49303160					SNP	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380474	NES15884350	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27211861 () rs orientation: forward

Symbol	Name	Function Class
1700125G22Rik	RIKEN cDNA 1700125G22 gene	693 bp downstream
Rr374716	regulatory region 374716	1442 bp downstream
Rr374717	regulatory region 374717	1283 bp upstream
Rr574354	regulatory region 574354	953 bp distal
Rr574355	regulatory region 574355	1299 bp proximal